We have developed several open source packages and tools for omics data analysis.

For more details, visit

  • maplet
    R toolbox for standardized data analysis pipelines
    github | paper

  • Subgroup Identification (SGI)
    Tool for clinical subgroup identification based on omics data
    github | paper

  • MoDentify
    Automatic network module identification based on Gaussian Graphical models
    github | paper

  • Odefy
    Automatic generation of ordinary differential equations (ODE) from boolean rules
    github | paper

  • Gepard
    Genome-scale dotplot-based sequence analysis tool
    github | paper