We have developed several open source packages and tools for omics data analysis.
For more details, visit https://github.com/krumsieklab
mapletR toolbox for standardized data analysis pipelines github | paper
Subgroup Identification (SGI)Tool for clinical subgroup identification based on omics datagithub | paper
MoDentifyAutomatic network module identification based on Gaussian Graphical modelsgithub | paper
OdefyAutomatic generation of ordinary differential equations (ODE) from boolean rulesgithub | paper
GepardGenome-scale dotplot-based sequence analysis tool github | paper